KISED of Korea NIH | Pathogen Analysis

HP/LP classification

The analysis of hemagglutinin (HA) cleavage site sequence demonstrates pathogenic feature such as highly pathogenic(HP) or low pathogenic(LP).

Type

Subtype

Segment

Paste nucleotide sequences in full aligned FASTA

Fasta format is a formatted text for representing either nucleotide/protein sequences
which begins with a single-line string containing (">") symbol in the first column.
The rest of the line is sequence strings.

format.

Sample

>PathogenSample1|A|H5N3 ATGGAAAAAATAATGATTGCACTCGCAATAATCAGCATTGTCAAAGGTGATCAAATCTGCATTGGTTATCATGCAAACAATTCAACAGAGCAGGTTGATACAATCATGGAGAAGAATGTGACAGTCACACATGCTCAGGATATACTGGAAAAAGAGCACAATGGGAAACTTTGCAGTCTTAAAGGAGTGAGACCCCTCATTCTGAAAGACTGCAGTGTAGCTGGATGGCTTCTTGGAAACCCAATGTGTGATGAGTTCCTGAATGTACCGGAATGGTCATACATCGTGGAAAAAGATAATCCAACCAATGACCTGTGCTATCCAGGAGACTTCAACGACTACGAAGAATTGAAGCATTTAATGAGCAGCACGAACCACTTTGAGAAAATTCAGATAATTCCTAGGAGTTCTTGGTCCAATCATGATGCCTCATCAGGAGTAAGCTCGGCATGCCCATACAATGGTAGACCTTCCTTTTTCAGGAATGTAGTGTGGTTGACCAAGAAGGGTAATGCGTACCCGACAATAAAAAGGACCTACAACAACACCAATGTAGAAGACCTTTTAATAATATGGGGAATTCACCACCCTAATGATGCAGCTGAACAAACAAAACTCTACCAGAACTCGAACACTTATGTGTCTGTAGGAACATCAACACTGAATCAGAGATCAATCCCAGAAATAGCCACTAGATCCAAAGTGAATGGACAAAGTGGAAGAATGGAATTTTTCTGGACAATACTAAGGCCAAACGATGCAATCAGCTTTGAAAGTAATGGGAATTTTATAGCTCCTGAATATGCGTACAAGATTGTCAAGAAAGGAGATTCAGCAATCATAAAAAGTGGATTGGAGTATGGTAACTGTGACACCAAATGTCAGACCCCAGTGGGTGCTATAAACTCCAGTATGCCCTTCCACAATGTTCATCCTCTTACTATTGGAGAGTGCCCCAAATATGTTAAGTCGGACAAGCTGGTCCTTGCAACTGGACTAAGAAACGTACCCCAAAGAGAAACAAGAGGCCTATTTGGAGCAATAGCAGGATTCATAGAAGGAGGATGGCAAGGAATGGTTGACGGATGGTACGGATACCACCATAGCAATGAGCAGGGAAGTGGATATGCTGCAGACAAAGAATCTACCCAGAAAGCAATCGATGGGATCACCAATAAAGTGAACTCAATCATTGACAAAATGAACACTCAATTTGAAGCCGTTGGGAAAGAATTCAACAATCTAGAAAGAAGAATAGAAAATTTGAATAAGAAAATGGAAGATGGATTTTTAGATGTATGGACTTATAATGCAGAACTTCTTGTGCTCATGGAAAACGAAAGAACCCTGGATTTCCATGATTCAAATGTCAAGAACCTGTACGATAAGGTCCGACTCCAGCTGAGAGACAATGCAAAAGAATTGGGCAACGGATGCTTTGAATTCTACCACAAGTGCGACAATGAATGTATGGAAAGTGTGAGAAATGGAACGTATGACTACCCGCAATACTCAGAAGAATCAAGACTGAACAGGGAGGAAATAAACGGAGTCAAGTTGGAATCAATGGGCACCTATCAGATATTATCAATCTACTCAACAGTGGCAAGTTCCCTAGCACTGGCAATCATGATAGCTGGTCTATCTTTTTGGATGTGCTCCAATGGATCATTGCAGTGCAGAATTTGCATCTAG------------ >PathogenSample2|A|H5N6 ATGGAGAAAATAGTGCTTCTTCTTGCAGTGGTTAGCCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACGATAATGGAAAAAAACGTCACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAGGCTCTGCGATCTGAATGGAGTGAAACCTCTGATTTTAAAGGATTGTAGTGTAGCTGGATGGCTTCTTGGAAACCCAATGTGCGACGAGTTCATCAGAGTGCCGGAATGGTCTTACATAGTGGAGAGGGCTAACCCAGCCAATGACCTCTGTTACCCAGGGAACCTCAATGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAATCATTTTGAGAAGACTCTGATCATCCCCAAGAGTTCTTGGCCCAATCATGAAACATCATTAGGGGTGAGCGCAGCATGTCCATACCAGGGAATGCCCTCCTTTTTCAGAAATGTGGTATGGCTTACCAAGAAGAACGATACATACCCAACAATAAAGATGAGCTACAATAATACCAATAGGGAAGATCTTTTGATACTATGGGGGATTCATCATTCCAACAATGCAGCAGAGCAGACAAATCTCTATAAAAATCCAACCACCTATGTTTCCGTTGGGACAGCAACATTAAACCAGAGATTGGTGCCAAAAATAGCTACTAGATCCCAAGTAAACGGGCAACGTGGAAGAATGGATTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCCACTTCGAGAGTAATGGAAATTTTATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAAATGGAATATGGCCACTGCAACACCAAATGTCAAACTCCAATAGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACTATCGGGGAGTGCCCCAAATACGTGAAATCAAACAAATTAGTCCTTGCGACTGGGCTCAGAAATAGTCCTCTAAGAGAAAGAAGAAGAAAAAGAGGACTATTTGGAGCTATAGCAGGGTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAACAGGGGAGTGGGTACGCTGCAGACAGAGAATCCACCCAAAAGGCAATAGATGGAGTTACCAATAAGGTCAACTCGATAATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAGTTTAATAACTTAGAACGGAGAATAGAGAACTTAAATAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTTTAGTTCTCATGGAAAATGAGAGAACTCTAGATTTCCATGACTCAAATGTCAAGAACCTTTATGACAAAGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAATGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAATGGGACGTATGACTACCCCCAGTATTCAGAAGAAGCAAGATTAAAAAGGGAAGAAATAAGCGGAGTGAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATTGTGGCTGGTCTATCTTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGAATTTGCATTTAA---